Ilumr Pulse Sequence plotting tool

General
3

Step by step instructions for installing the pulse sequence plotting environment using JupyterLab Desktop:

  1. Download and install jupyterlab desktop: GitHub - jupyterlab/jupyterlab-desktop: JupyterLab desktop application, based on Electron.

  2. Download and extract: sequence_plotting_tools_24_02_12.zip - Google Drive

  3. Open jupyterlab desktop

  4. Top right menu->Manage Python Environments

    step4
    step41024×768 30.7 KB

  5. Settings->Install bundled (if not already) then tick “Use bundled Python…”

    step5
    step5800×600 24.6 KB

  6. Close both jupyterlab windows and reopen jupyterlab desktop

  7. Top right menu->Manage Python Environments

  8. Create New

  9. Check “New Environment”

  10. Name: sequence_plotting

  11. Type: conda

  12. Uncheck “Include jupyterlab”

  13. Additional Python packages: “jupyterlab==3.6.8 panel==1.4.5 numpy==1.26.4 PyYAML==5.4.1 pyzmq==26.2.0 scipy==1.11.4 zerorpc-python==0.6.3 msgpack-python==1.1.0 msgpack-numpy==0.4.8 matplotlib==3.9.2”

  14. Create

    step14
    step14862×664 28 KB

  15. When finished close “Manage Python Environments” window

  16. New session…

  17. Environment menu->conda: sequence_plotting

    step17
    step171024×768 42.2 KB

  18. Navigate to sequence_plotting directory in file browser and open notebooks->plot_RARE_example.ipynb

    step18
    step181024×768 38 KB

  19. Run->Run All Cells

    step19
    step191371×856 70.5 KB

If all is successful, you should see the waveforms of the RARE sequence plotted as seen above. The bokeh warnings may be ignored.